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simphony simulates large-scale, rhythmic data, including transcriptome data and behavioral activity data. For technical details on how we designed and validated simphony, check out the paper and the accompanying results.


Option 1: CRAN


Option 2: Hughey Lab Drat Repository

  1. Install BiocManager.

    if (!requireNamespace('BiocManager', quietly = TRUE))
  2. If you use RStudio, go to Tools → Global Options… → Packages → Add… (under Secondary repositories), then enter:

    You only have to do this once. Then you can install or update the package by entering:


    Alternatively, you can install or update the package by entering:

    BiocManager::install('simphony', site_repository = '')


For an introduction to the package, read the introductory vignette. To explore more of simphony’s capabilities, check out the example vignette. For more details, check out the reference documentation.