Calculate expected abundanceSource:
Calculate expected abundance for multiple features at multiple timepoints in multiple conditions.
getExpectedAbund( featureMetadata, times = NULL, sampleMetadata = NULL, byCondGroup = is.null(times) )
phase, where every row corresponds to a gene. If
TRUE, then must also have columns
Numeric vector of the times at which to calculate expected abundance for each row in
sampleMetadatamust be provided, and the former takes precedence.
Logical for whether to speed up the calculation by grouping by the columns
group. Primarily for internal use.
data.table derived from
featureMetadata (but with more rows),
with additional columns
mu and possibly others. If sampling
will use the negative binomial family,
mu corresponds to log2 counts.